| Protein ZmC2H46 | |
|---|---|
|
ZmC2H46 is a protein in the C2H2 family.
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| Information | |
| TF Name: | ZmC2H46 |
| Species: | Maize |
| TF Family: | C2H2 |
| Gene Name(Synonym): | C2H46 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 2 |
Protein ZmC2H46
ZmC2H46 is a protein in the C2H2 family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d026684 | DAPseq |  |
sequence | fimo | position |
| Zm00001d026684 | DAPseq |  |
sequence | fimo | position |
| Zm00001d026684 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d026684 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmC2H46 is the regulator
Interactions where ZmC2H46 is the target
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GRMZM2G136494_T01 from maize genome v3
Amino Acid Sequence
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MVERPGRSAGVREANKTSAAAMVKTTTTTNKEELESPSYRLAAFKSLFSCRNSHARPRAPDTGTGSRSKRLGCSAPSICK
LKDDSVPVPPKETTGTASAGEPCKRRASVSGSSDRCVKKPQCGAGSNKQLQRGGSSSSSGGSSFRAGMQLRRLSGCYECH
MVVAGSASMRATTICPCPDCGEVFVRQESLQLHQSIRHAVSELGTDDTSRNIIEIIFQSSWLKKQSPVCKVDRILKVNNT
PRTLARFEEYRDAVKARAGAEQLAVAAANSNRHPRCTADGNELLRFHCATLACSLGLNGATHLCDAAGTCAACGIIRDGF
SSGGVLTMATSGRAHDAAEAGAGLDEETTPRAMLVCRVIAGRVKRPKEAVPEEEAVADAAEESEYDSVAGSAGVYSNLEE
LLVFNPRAILPCFVVVYKA
MVERPGRSAGVREANKTSAAAMVKTTTTTNKEELESPSYRLAAFKSLFSCRNSHARPRAPDTGTGSRSKRLGCSAPSICK
LKDDSVPVPPKETTGTASAGEPCKRRASVSGSSDRCVKKPQCGAGSNKQLQRGGSSSSSGGSSFRAGMQLRRLSGCYECH
MVVAGSASMRATTICPCPDCGEVFVRQESLQLHQSIRHAVSELGTDDTSRNIIEIIFQSSWLKKQSPVCKVDRILKVNNT
PRTLARFEEYRDAVKARAGAEQLAVAAANSNRHPRCTADGNELLRFHCATLACSLGLNGATHLCDAAGTCAACGIIRDGF
SSGGVLTMATSGRAHDAAEAGAGLDEETTPRAMLVCRVIAGRVKRPKEAVPEEEAVADAAEESEYDSVAGSAGVYSNLEE
LLVFNPRAILPCFVVVYKA
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
Nucleotide Sequence
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GCATTTGGATCTTTTAGTCTAGACA...
GCATTTGGATCTTTTAGTCTAGACATGCATGCTTTGAACTTGAGTTCCACCTCGGTATTGGGCATCGACCTAGTTTTGTGCCATCCATTGTTGTTAGTGTTAGCTAGCAAACATGGCCTTAATCCCATGATGAGCAGGTGCAGGTGCAGATAGCATCATCCCCAAAAACATAAAGCTGCAGCAACAACTAGCCTAGAAATAAAGCATCCTAGCTCTTTTCCTCCTCCACCACCACTTCTCAAGTACTCCCATCCAACACGAACGAACATCTAGAGCTTGGAAGAAAGCTAGCTAGCGAGAGGAATAGGATCGCAATGGTGGAACGGCCGGGCAGATCGGCAGGCGTCAGGGAGGCCAATAAGACTTCCGCTGCCGCCATGGTGAAGACGACGACGACGACCAATAAGGAGGAGCTGGAGAGCCCGTCCTACAGGTTAGCAGCGTTCAAGAGCCTCTTCTCGTGCAGGAACAGCCACGCGCGGCCGCGGGCGCCGGACACCGGCACCGGCAGCAGGAGCAAGAGGCTGGGCTGCTCCGCGCCGTCCATCTGCAAGCTCAAGGACGACAGCGTGCCCGTGCCGCCCAAGGAAACCACGGGCACGGCGTCGGCAGGCGAGCCCTGCAAGCGCCGCGCGTCCGTGAGCGGGAGCAGCGATCGGTGCGTGAAGAAGCCCCAATGTGGCGCTGGCAGCAACAAGCAGCTGCAGCGTGGCGGGTCGTCGTCGTCGTCGGGCGGGTCGTCGTTCAGGGCCGGCATGCAGCTGAGGCGGCTTTCGGGGTGCTACGAGTGCCACATGGTGGTGGCGGGCAGCGCCTCCATGAGGGCCACCACCATCTGCCCCTGCCCGGACTGCGGCGAGGTGTTCGTCAGGCAGGAGAGCCTCCAGCTCCACCAGTCCATCAGGCACGCAGTGTCCGAGCTTGGCACTGATGACACGAGCCGCAACATCATCGAGATCATCTTCCAGTCCAGCTGGCTCAAGAAGCAGAGCCCCGTGTGCAAGGTCGACCGCATCCTCAAGGTGAACAACACGCCCAGAACGCTGGCCCGCTTCGAGGAGTACCGTGACGCTGTCAAGGCCAGGGCGGGCGCCGAGCAGCTGGCGGTAGCGGCGGCCAACAGCAACAGGCACCCGCGCTGCACCGCCGACGGCAACGAGCTGCTCCGGTTCCACTGCGCCACCCTGGCCTGCTCGCTCGGCCTCAACGGCGCCACGCACCTCTGCGACGCCGCGGGGACCTGCGCAGCGTGCGGCATCATCCGCGACGGCTTCAGCAGCGGCGGGGTGCTGACCATGGCCACGAGCGGCCGCGCGCACGACGCTGCGGAGGCTGGCGCCGGACTGGATGAGGAAACCACTCCAAGGGCGATGCTGGTGTGCCGGGTCATCGCGGGAAGGGTGAAGCGGCCCAAAGAAGCGGTACCAGAGGAGGAGGCCGTCGCCGACGCCGCCGAGGAGTCAGAGTACGACTCGGTTGCGGGGTCGGCCGGGGTGTACTCCAACCTGGAGGAGCTGCTGGTGTTCAACCCCAGGGCCATCCTCCCATGCTTTGTCGTTGTCTACAAGGCTTAGCTACTGGTGGTTACACTTTACAATCCATGCAATGCAGTCCTTGTATTAAGTAACAAACAATTCATGATAAACCTAATGTATTGACTGACGAATGGTCACTCTTAACTGCTTGCTATTTGTGACATCCATGCAACGTGTTGAGAGCAGTGACATGACATAGCGGGTTTTAACCCAAGACAGACAGACAGACCAGACCATAGGGTCCCTCCCATCCTCCTACTCCCACTCCACCGTTGCAGGCGGCTTAGATGTGATGTCCTGGCAAACGCGGTTGATGCCACGCACATTGTTGCAAATCTTGTTTACCACATCTACCAGGAATGCATGCTCAAAATAGTAC
Zm00001d026684_T001 from maize genome v4
Amino Acid Sequence
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MVERPGRSAGVREANKTSAAAMVKTTTTTNKEELESPSYRLAAFKSLFSCRNSHARPRAPDTGTGSRSKRLGCSAPSICK
LKDDSVPVPPKETTGTASAGEPCKRRASVSGSSDRCVKKPQCGAGSNKQLQRGGSSSSSGGSSFRAGMQLRRLSGCYECH
MVVAGSASMRATTICPCPDCGEVFVRQESLQLHQSIRHAVSELGTDDTSRNIIEIIFQSSWLKKQSPVCKVDRILKVNNT
PRTLARFEEYRDAVKARAGAEQLAVAAANSNRHPRCTADGNELLRFHCATLACSLGLNGATHLCDAAGTCAACGIIRDGF
SSGGVLTMATSGRAHDAAEAGAGLDEETTPRAMLVCRVIAGRVKRPKEAVPEEEAVADAAEESEYDSVAGSAGVYSNLEE
LLVFNPRAILPCFVVVYKA
Nucleotide Sequence
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AACATCTAGAGCTTGGAAGAAAGCT...
AACATCTAGAGCTTGGAAGAAAGCTAGCTAGCGAGAGGAATAGGATCGCAATGGTGGAACGGCCGGGCAGATCGGCAGGCGTCAGGGAGGCCAATAAGACTTCCGCTGCCGCCATGGTGAAGACGACGACGACGACCAATAAGGAGGAGCTGGAGAGCCCGTCCTACAGGTTAGCAGCGTTCAAGAGCCTCTTCTCGTGCAGGAACAGCCACGCGCGGCCGCGGGCGCCGGACACCGGCACCGGCAGCAGGAGCAAGAGGCTGGGCTGCTCCGCGCCGTCCATCTGCAAGCTCAAGGACGACAGCGTGCCCGTGCCGCCCAAGGAAACCACGGGCACGGCGTCGGCAGGCGAGCCCTGCAAGCGCCGCGCGTCCGTGAGCGGGAGCAGCGATCGGTGCGTGAAGAAGCCCCAATGTGGCGCTGGCAGCAACAAGCAGCTGCAGCGTGGCGGGTCGTCGTCGTCGTCGGGCGGGTCGTCGTTCAGGGCCGGCATGCAGCTGAGGCGGCTTTCGGGGTGCTACGAGTGCCACATGGTGGTGGCGGGCAGCGCCTCCATGAGGGCCACCACCATCTGCCCCTGCCCGGACTGCGGCGAGGTGTTCGTCAGGCAGGAGAGCCTCCAGCTCCACCAGTCCATCAGGCACGCAGTGTCCGAGCTTGGCACTGATGACACGAGCCGCAACATCATCGAGATCATCTTCCAGTCCAGCTGGCTCAAGAAGCAGAGCCCCGTGTGCAAGGTCGACCGCATCCTCAAGGTGAACAACACGCCCAGAACGCTGGCCCGCTTCGAGGAGTACCGTGACGCTGTCAAGGCCAGGGCGGGCGCCGAGCAGCTGGCGGTAGCGGCGGCCAACAGCAACAGGCACCCGCGCTGCACCGCCGACGGCAACGAGCTGCTCCGGTTCCACTGCGCCACCCTGGCCTGCTCGCTCGGCCTCAACGGCGCCACGCACCTCTGCGACGCCGCGGGGACCTGCGCAGCGTGCGGCATCATCCGCGACGGCTTCAGCAGCGGCGGGGTGCTGACCATGGCCACGAGCGGCCGCGCGCACGACGCTGCGGAGGCTGGCGCCGGACTGGATGAGGAAACCACTCCAAGGGCGATGCTGGTGTGCCGGGTCATCGCGGGAAGGGTGAAGCGGCCCAAAGAAGCGGTACCAGAGGAGGAGGCCGTCGCCGACGCCGCCGAGGAGTCAGAGTACGACTCGGTTGCGGGGTCGGCCGGGGTGTACTCCAACCTGGAGGAGCTGCTGGTGTTCAACCCCAGGGCCATCCTCCCATGCTTTGTCGTTGTCTACAAGGCTTAGCTACTGGTGGTTACACTTTACAATCCATGCAATGCAGTCCTTGTATTAAGTAACAAACAATTCATGATAAACCTAATGTATTGACTGACGAATGGTCACTCTTAA
Zm00001eb434360_T001 from maize genome v5
Amino Acid Sequence
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MVERPGRSAGVREANKTSAAAMVKTTTTTNKEELESPSYRLAAFKSLFSCRNSHARPRAPDTGTGSRSKRLGCSAPSICK
LKDDSVPVPPKETTGTASAGEPCKRRASVSGSSDRCVKKPQCGAGSNKQLQRGGSSSSSGGSSFRAGMQLRRLSGCYECH
MVVAGSASMRATTICPCPDCGEVFVRQESLQLHQSIRHAVSELGTDDTSRNIIEIIFQSSWLKKQSPVCKVDRILKVNNT
PRTLARFEEYRDAVKARAGAEQLAVAAANSNRHPRCTADGNELLRFHCATLACSLGLNGATHLCDAAGTCAACGIIRDGF
SSGGVLTMATSGRAHDAAEAGAGLDEETTPRAMLVCRVIAGRVKRPKEAVPEEEAVADAAEESEYDSVAGSAGVYSNLEE
LLVFNPRAILPCFVVVYKA
Nucleotide Sequence
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GCATTTGGATCTTTTAGTCTAGACA...
GCATTTGGATCTTTTAGTCTAGACATGCATGCTTTGAACTTGAGTTCCACCTCGGTATTGGGCATCGACCTAGTTTTGTGCCATCCATTGTTGTTAGTGTTAGCTAGCAAACATGGCCTTAATCCCATGATGAGCAGGTGCAGGTGCAGATAGCATCATCCCCAAAAACATAAAGCTGCAGCAACAACTAGCCTAGAAATAAAGCATCCTAGCTCTTTTCCTCCTCCACCACCACTTCTCAAGTACTCCCATCCAACACGAACGAACATCTAGAGCTTGGAAGAAAGCTAGCTAGCGAGAGGAATAGGATCGCAATGGTGGAACGGCCGGGCAGATCGGCAGGCGTCAGGGAGGCCAATAAGACTTCCGCTGCCGCCATGGTGAAGACGACGACGACGACCAATAAGGAGGAGCTGGAGAGCCCGTCCTACAGGTTAGCAGCGTTCAAGAGCCTCTTCTCGTGCAGGAACAGCCACGCGCGGCCGCGGGCGCCGGACACCGGCACCGGCAGCAGGAGCAAGAGGCTGGGCTGCTCCGCGCCGTCCATCTGCAAGCTCAAGGACGACAGCGTGCCCGTGCCGCCCAAGGAAACCACGGGCACGGCGTCGGCAGGCGAGCCCTGCAAGCGCCGCGCGTCCGTGAGCGGGAGCAGCGATCGGTGCGTGAAGAAGCCCCAATGTGGCGCTGGCAGCAACAAGCAGCTGCAGCGTGGCGGGTCGTCGTCGTCGTCGGGCGGGTCGTCGTTCAGGGCCGGCATGCAGCTGAGGCGGCTTTCGGGGTGCTACGAGTGCCACATGGTGGTGGCGGGCAGCGCCTCCATGAGGGCCACCACCATCTGCCCCTGCCCGGACTGCGGCGAGGTGTTCGTCAGGCAGGAGAGCCTCCAGCTCCACCAGTCCATCAGGCACGCAGTGTCCGAGCTTGGCACTGATGACACGAGCCGCAACATCATCGAGATCATCTTCCAGTCCAGCTGGCTCAAGAAGCAGAGCCCCGTGTGCAAGGTCGACCGCATCCTCAAGGTGAACAACACGCCCAGAACGCTGGCCCGCTTCGAGGAGTACCGTGACGCTGTCAAGGCCAGGGCGGGCGCCGAGCAGCTGGCGGTAGCGGCGGCCAACAGCAACAGGCACCCGCGCTGCACCGCCGACGGCAACGAGCTGCTCCGGTTCCACTGCGCCACCCTGGCCTGCTCGCTCGGCCTCAACGGCGCCACGCACCTCTGCGACGCCGCGGGGACCTGCGCAGCGTGCGGCATCATCCGCGACGGCTTCAGCAGCGGCGGGGTGCTGACCATGGCCACGAGCGGCCGCGCGCACGACGCTGCGGAGGCTGGCGCCGGACTGGATGAGGAAACCACTCCAAGGGCGATGCTGGTGTGCCGGGTCATCGCGGGAAGGGTGAAGCGGCCCAAAGAAGCGGTACCAGAGGAGGAGGCCGTCGCCGACGCCGCCGAGGAGTCAGAGTACGACTCGGTTGCGGGGTCGGCCGGGGTGTACTCCAACCTGGAGGAGCTGCTGGTGTTCAACCCCAGGGCCATCCTCCCATGCTTTGTCGTTGTCTACAAGGCTTAGCTACTGGTGGTTACACTTTACAATCCATGCAATGCAGTCCTTGTATTAAGTAACAAACAATTCATGATAAACCTAATGTATTGACTGACGAATGGTCACTCTTAACTGCTTGCTATTTGTGACATCCATGCAACGTGTTGAGAGCAGTGACATGACATAGCGGGTTTTAACCCAAGACAGACAGACAGACCAGACCATAGGGTCCCTCCCATCCTCCTACTCCCACTCCACCGTTGCAGGCGGCTTAGATGTGATGTCCTGGCAAACGCGGTTGATGCCACGCACATTGTTGCAAATCTTGTTTACCACATCTACCAGGAATGCATGCTCAAAATAGTACCT
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